Web Mining for Protein-to-Protein Interaction Information

Web Mining for Protein-to-Protein Interaction Information

Hsi-Chieh Lee (Yuan Ze University, Taiwan and National Chengchi University, Taiwan), Szu-Wei Huang (Yuan Ze University, Taiwan) and Eldon Y. Li (National Chengchi University, Taiwan and California Polytechnic State University, USA)
Copyright: © 2007 |Pages: 30
DOI: 10.4018/978-1-59140-678-5.ch012
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Abstract

This study proposes a mining system for finding protein-to-protein interaction literatures from the databases on the Internet. In this system, we search for discriminating words for protein-to-protein interaction by way of statistics and the results from literatures. A threshold is also evaluated to check if a given literature is related to protein-to-protein interactions. In addition, a keypage-based search mechanism is used to find related papers for protein-to-protein interactions from a given document. To expand the search space and ensure better performance of the system, mechanisms for protein name identification and databases for protein names are also developed. The system is designed with a web-based user interface and a job-dispatching kernel. Experiments are conducted and the results have been checked by a biomedical expert. The experimental results indicate that by using the proposed mining system, it is helpful for researchers to find protein-to-protein literatures from the overwhelming pieces of information available on the biomedical databases over the Internet.

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Table of Contents
Preface
Eldon Y. Li
Acknowledgements
Eldon Y. Li, Timon C. Du
Chapter 1
Charles Ling-yu Chou
This chapter introduces the incentives for the creation of the Semantic Web, the methodology for its development, and the current status of this... Sample PDF
From World Wide Web to Semantic Web
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Chapter 2
Farshad Hakimpour, Suo Cong, Daniela E. Damm
This chapter introduces the emerging technology of Semantic Web services. It concentrates on two dominant specifications in this domain, namely... Sample PDF
Semantic Descriptions of Web Services
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Chapter 3
Sam Lee
This chapter introduces an approach to the development of intelligent Semantic Web services, which are envisioned as system cells that actively... Sample PDF
Developing Intellingent Semantic Web Services
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Chapter 4
Quan Thanh Tho, Hui Siu Cheung, A. C.M. Fong
This chapter discusses Semantic Web support for customer services. Customer service support is an important operation for most multinational... Sample PDF
Semantic Web Support for Customer Services
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Chapter 5
Wan-Yeung Wong, Tak-Pang Lau, Irwin King, Michael R. Lyu
This chapter gives a tutorial on resource description framework (RDF), its XML representation, and Jena, a set of Java-based API designed and... Sample PDF
A Tutorial on RDF with Jena
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Chapter 6
José-Manuel Lopez-Cobo, Sinuhé Arroyo, Miguel-Angel Sicilia, Salvador Sanchez
The evolution of learning technology standards has resulted in a degree of interoperability across systems that enable the interchange of learning... Sample PDF
A Semantic Web Service Architecture for Learing Object Repositories
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Chapter 7
Shiu-li Huang, Fu-ren Lin
This chapter designs a multi-agent argumentation system for e-commerce. This system applies Semantic Web technology to facilitate agents to share... Sample PDF
Using Semantic Web to Facilitate Agent-to-Agent Argumentation for e-Commerce
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Chapter 8
Timon C. Du, Eldon Y. Li
Business process management systems such as the workflow management system and the enterprise application integration system manage process flow on... Sample PDF
Building Dynamic Business Process in P2P Semantic Web
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Chapter 9
Cheng-Jye Luh, Lin-Chih Chen
This chapter presents an intelligent metasearch engine that can recommend a user’s next hyperlink access and relevant paragraphs extracted from... Sample PDF
An Intelligent Metasearch Engine with Link Prediction and Page Clipping Generation Capabilities
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Chapter 10
Timon C. Du, Richard Hwang, Charles Ling-yu Chou
Given the rapid changes in the information technologies, the issue of information securities and company’s internal controls has become very... Sample PDF
Access Control for Web Service Applications: An Example in Collaborative Auditing
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Chapter 11
Amanda Spink, Robert M. Wolfe, Bernard J. Jansen
This chapter discusses issues related to semantics and the medical Web. Much health information is available on the Web, but not always effectively... Sample PDF
Semantics and the Medical Web: Towards Effective Medical Healthcare Search
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Chapter 12
Hsi-Chieh Lee, Szu-Wei Huang, Eldon Y. Li
This study proposes a mining system for finding protein-to-protein interaction literatures from the databases on the Internet. In this system, we... Sample PDF
Web Mining for Protein-to-Protein Interaction Information
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Chapter 13
Arijit Sengupta, Henry Kim
We present SWAP (Semantic Web application pyramid), a framework for incorporating ontologies in data-oriented semantic Web applications. We have... Sample PDF
SWAP - A Framework for Ontology Support in Semantic Web Applications
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