Journal Contents: International Journal of Knowledge Discovery in Bioinformatics (IJKDB)

Volume 8 (2018)
Issue 1
Special Issue on Advances in Machine Learning and Data Mining
Guest Editorial Preface
Brojo Kishore Mishra (C.V. Raman College of Engineering, Bhubaneswar, India), V. Santhi (VIT University, Vellore, India), Sanjaya Kumar Panda (V.S.S. University of Technology, Burla, India), Ashish Khanna (Maharaja Agrasen Institute of Technology, New Delhi, India), Vishal Gour (Government Engineering College, Bikaner, India), Vishal Jain (Bharati Vidyapeeth's Institute of Computer Applications and Management (BVICAM), New Delhi, India)
Article 1
Data Mining Approach for the Early Risk Assessment of Gestational Diabetes Mellitus (pages 1-11)
Saeed Rouhani (University of Tehran, Tehran, Islamic Republic of Iran), Maryam MirSharif (University of Tehran, Tehran, Islamic Republic of Iran)
Article 2
Spam Detection on Social Media Using Semantic Convolutional Neural Network (pages 12-26)
Gauri Jain (Banasthali University, Banasthali, India), Manisha Sharma (Banasthali University, Banasthali, India), Basant Agarwal (Swami Keshvanand Institute of Technology (SKIT), Jaipur, India)
Article 3
Performance Assessment of Learning Algorithms on Multi-Domain Data Sets (pages 27-41)
Amit Kumar (Computer Science and Engineering, Birla Institute of Technology, Ranchi, India), Bikash Kanti Sarkar (Computer Science and Engineering, Birla Institute of Technology, Ranchi, India)
Article 4
Proficient Normalised Fuzzy K-Means With Initial Centroids Methodology (pages 42-59)
Deepali Virmani (Bhagwan Parshuram Institute of Technology, New Delhi, India), Nikita Jain (Bhagwan Parshuram Institute of Technology, New Delhi, India), Ketan Parikh (Bhagwan Parshuram Institute of Technology, New Delhi, India), Shefali Upadhyaya (Bhagwan Parshuram Institute of Technology, New Delhi, India), Abhishek Srivastav (Bhagwan Parshuram Institute of Technology, New Delhi, India)
Article 5
Sentiment Based Information Diffusion in Online Social Networks (pages 60-74)
Mohammad Ahsan (National Institute of Technology, Hamirpur, India), Madhu Kumari (National Institute of Technology, Hamirpur, India), Tajinder Singh (National Institute of Technology, Hamirpur, India), Triveni Lal Pal (National Institute of Technology, Hamirpur, India)
Article 6
Estimation of Fractal Dimension in Different Color Model (pages 75-93)
Sumitra Kisan (Veer Surendra Sai University of Technology, Burla, India), Sarojananda Mishra (Indira Gandhi Institute of Technology, Sarang, Dhenkanal, India), Ajay Chawda (Veer Surendra Sai University of Technology, Burla, India), Sanjay Nayak (Veer Surendra Sai University of Technology, Burla, India)
Article 7
GEView (Gene Expression View) Tool for Intuitive and High Accessible Visualization of Expression Data for Non-Programmer Biologists (pages 94-105)
Libi Hertzberg (Shalvata Mental Health Center, Affiliated to the Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel & Weizmann Institute of Science, Rehovot, Israel), Assif Yitzhaky (Weizmann Institute of Science, Rehovot, Israel), Metsada Pasmanik-Chor (Bioinformatics Unit, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel)
Issue 2
Special Issue on Knowledge Discovery in Biomedicine
Guest Editorial Preface
Samah Jamal Fodeh (Yale University, New Haven, USA)
Article 1
Suicide Risk on Twitter (pages 1-17)
Samah Jamal Fodeh (Yale University, USA), Edwin D. Boudreaux (University of Massachusetts Medical School, USA), Rixin Wang (Yale University, USA), Dennis Silva (Worcester Polytechnic Institute, USA), Robert Bossarte (Department of Veteran Affairs, USA), Joseph Lucien Goulet (Department of Veteran Affairs, USA), Cynthia Brandt (Yale University, USA), Hamada Hamid Altalib (Yale University, USA)
Article 2
Augmenting Medical Decision Making With Text-Based Search of Teaching File Repositories and Medical Ontologies: Text-Based Search of Radiology Teaching Files (pages 18-43)
Priya Deshpande (DePaul University, Chicago, USA), Alexander Rasin (DePaul University, Chicago, USA), Eli T Brown (DePaul University, Chicago, USA), Jacob Furst (DePaul University, Chicago, USA), Steven M. Montner (Department of Radiology, The University of Chicago, Chicago, USA), Samuel G. Armato III (Department of Radiology, University of Chicago, Chicago, USA), Daniela S Raicu (DePaul University, Chicago, USA)
Article 3
Machine Learning Based Program to Prevent Hospitalizations and Reduce Costs in the Colombian Statutory Health Care System (pages 44-64)
Alvaro J Riascos (University of los Andes and Quantil, Bogotá, Colombia), Natalia Serna (University of Wisconsin-Madison, Madison, USA)
Volume 7 (2017)
Issue 1
Special Issue on Scalable Computing for Knowledge Discovery
Guest Editorial Preface
Brojo Kishore Mishra (Department of Information Technology, C. V. Raman College of Engineering, Bhubaneswar, India), Sanjaya Kumar Panda (VSS University of Technology, Burla, India & Indian Institute of Technology (ISM), Dhanbad, India), Devashree Tripathy (University of California, Riverside, USA), Deepak Puthal (CSIRO, Sydney, Australia), Siba Mishra (Indian Institute of Technology (ISM), Dhanbad, India), Sushruta Mishra (C. V. Raman College of Engineering, Bhubaneswar, India)
Article 1
Time-Aware Task Allocation for Cloud Computing Environment (pages 1-13)
Sushanta Meher (Institute of Engineering and Management, Jeypore, Burla, India), Sohan Kumar Pande (VSSUT, Burla, India), Sanjaya Kumar Panda (Indian Institute of Technology (ISM), Dhanbad and VSSUT, Burla, India)
Article 2
Green DRCT: Measuring Energy Consumption of an Enhanced Branch Coverage and Modified Condition/Decision Coverage Technique (pages 14-29)
Sangharatna Godboley (NIT Rourkela, Department of Computer Science and Engineering, Rourkela, India), Arpita Dutta (NIT Rourkela, Department of Computer Science and Engineering, Rourkela, India), Durga Prasad Mohapatra (NIT Rourkela, Department of Computer Science and Engineering, Rourkela, India)
Article 3
Implementation of n-gram Methodology for Rotten Tomatoes Review Dataset Sentiment Analysis (pages 30-41)
Prayag Tiwari (National University of Science and Technology MISiS, Department of Computer Science and Engineering, Moscow, Russia), Brojo Kishore Mishra (C. V. Raman College of Engineering, Department of Information Technology, Bhubaneswar, India), Sachin Kumar (Indian Institute of Technology Roorkee, Center for Transportation Systems, Roorkee, India), Vivek Kumar (National University of Science and Technology MISiS, Department of Computer Science and Engineering, Moscow, Russia)
Article 4
Improving Resiliency in SDN using Routing Tree Algorithms (pages 42-57)
Kshira Sagar Sahoo (NIT, Department of Computer Science and Engineering, Rourkela, India), Bibhudatta Sahoo (NIT, Department of Computer Science and Engineering, Rourkela, India), Ratnakar Dash (NIT, Department of Computer Science and Engineering, Rourkela, India), Brojo Kishore Mishra (C. V. Raman College of Engineering, Department of Information Technology, Bhubaneswar, India)
Article 5
K-NN Based Outlier Detection Technique on Intrusion Dataset (pages 58-70)
Santosh Kumar Sahu (National Institute of Technology, Department of Computer Science and Engineering, Rourkela, India), Sanjay Kumar Jena (National Institute of Technology, Department of Computer Science and Engineering, Rourkela, India), Manish Verma (National Institute of Technology, Department of Computer Science and Engineering, Rourkela, India)
Article 6
Efficient Fault Tolerant Algorithms for Internet Distributed Systems (pages 71-90)
Swati Mishra (Department of CSE and IT, VSSUT, Burla, India), Sanjaya Kumar Panda (Department of CSE, Indian Institute of Technology (ISM), Dhanbad, India & Department of CSE and IT, VSSUT, Burla, India)
Article 7
A Distributed Scalar Controller Selection Scheme for Redundant Data Elimination in Sensor Networks (pages 91-104)
Sushree Bibhuprada B. Priyadarshini (VSSUT, Department of Computer Science and Engineering, Burla, India), Suvasini Panigrahi (VSSUT, Department of Computer Science and Engineering, Burla, India)
Issue 2
Article 1
A Web Database IR-PDB for Sequence Repeats of Proteins in the Protein Data Bank (pages 1-10)
Selvaraj Samuel (Department of Bioinformatics, School of Life Sciences, Bharathidasan University, Tiruchirappalli, India), Mary Rajathei (Department of Bioinformatics, School of Life Sciences, Bharathidasan University, Tiruchirappalli, India)
Article 2
Mitochondrial Pyruvate Carrier 1 and 2 Heterodimer, In Silico, Models of Plant and Human Complexes: A Comparison of Structure and Transporter Binding Properties (pages 11-42)
Jason L Dugan (University of Texas at San Antonio, San Antonio, Texas, United States), Allen K Bourdon (University of Tennessee at Knoxville, Knoxville, Tennessee, United States), Clyde F. Phelix (University of Texas at San Antonio, San Antonio, Texas, United States)
Article 3
MSDC-0160 and MSDC-0602 Binding with Human Mitochondrial Pyruvate Carrier (MPC) 1 and 2 Heterodimer: PPARγ Activating and Sparing TZDs as Therapeutics (pages 43-67)
Clyde F. Phelix (University of Texas at San Antonio, San Antonio, Texas, United States), Allen K Bourdon (University of Tennessee at Knoxville, Knoxville, Tennessee, United States), Jason L Dugan (University of Texas at San Antonio, San Antonio, Texas, United States), Greg Villareal (AL Phahelix Biometrics, Inc., San Antonio, Texas, United States), George Perry (University of Texas at San Antonio, San Antonio, Texas, United States)
Article 4
Alzheimer's and Parkinson's Disease Novel Therapeutic Target: The Mitochondrial Pyruvate Carrier - Ligand Docking to Screen Natural Compounds Related to Classic Inhibitors (pages 68-82)
Allen K. Bourdon (University of Tennessee at Knoxville, Knoxville, Tennessee, United States), Greg Villareal (AL Phahelix Biometrics, Inc., San Antonio, Texas, United States), George Perry (University of Texas at San Antonio, San Antonio, Texas, United States), Clyde F. Phelix (University of Texas at San Antonio, San Antonio, Texas, United States)
Article 5
Genome Subsequences Assembly Using Approximate Matching Techniques in Hadoop (pages 83-97)
Govindan Raja (National Institute of Technology, Trichy, India), U. Srinivasulu Reddy (Department of Computer Applications, National Institute of Technology, Trichy, India)
Volume 6 (2016)
Issue 1
Special Issue on Mining Big Biomedical Data
Guest Editorial Preface
Samah Jamal Fodeh (Yale University, New Haven, CT, USA)
Article 1
Genetic Diagnosis of Cancer by Evolutionary Fuzzy-Rough based Neural-Network Ensemble (pages 1-16)
Sujata Dash (North Orissa University, Baripada, India), Bichitrananda Patra (KMBB College of Engineering and Technology, Bhubaneswar, India)
Article 2
Detection of Breast Cancer by the Identification of Circulating Tumor Cells Using Association Rule Mining (pages 17-25)
Jananee S. (Sri Venkateswara College of Engineering, Chennai, India), Nedunchelian R. (Sri Venkateswara College of Engineering, Chennai, India)
Article 3
A Novel Evolutionary Biclustering Approach using MapReduce(EBC-MR) (pages 26-36)
Rathipriya R. (Department of Computer Science, Periyar University, Salem, India)
Article 4
Local Optima Avoidance in GA Biclustering using Map Reduce (pages 37-47)
Gowri R. (Periyar University, Salem, India), Rathipriya R. (Department of Computer Science, Periyar University, Salem, India)
Issue 2
Article 1
A Particle Swarm Optimization based Hybrid Recommendation System (pages 1-10)
Rabi Narayan Behera (Department of Computer Science, North Orissa University, Baripada, Orissa, India), Sujata Dash (North Orissa University, Baripada, India)
Article 2
A Latent Feature Model Approach to Biclustering (pages 11-28)
José Caldas (Aalto University, Espoo, Finland), Samuel Kaski (Aalto University, Espoo, Finland)
Article 3
Impact of Swarm Intelligence Techniques in Diabetes Disease Risk Prediction (pages 29-43)
Sushruta Mishra (C. V. Raman College of Engineering, Bhubaneswar, India), Brojo Kishore Mishra (Department of Information Technology, C. V. Raman College of Engineering, Bhubaneswar, India), Soumya Sahoo (C. V. Raman College of Engineering, Bhubaneswar, India), Bijayalaxmi Panda (C. V. Raman College of Engineering, Bhubaneswar, India)
Article 4
Predictive Toxicity of Conventional Triazole Pesticides by Simulating Inhibitory Effect on Human Aromatase CYP19 Enzyme (pages 44-56)
Tamar Chachibaia (University of Santiago de Compostela, Santiago de Compostela, Spain and Tbilisi State University, Tbilisi, Georgia), Joy Harris Hoskeri (Institute of Experimental Toxicology and Pharmacology, Bratislava, Slovakia)
Volume 5 (2015)
Issue 1
Article 1
In Silico Biosimulation of Isoflurane Effects on Brain Using Transcriptome-To-Metabolome™ Technology: Anesthesia Effects on Rat Amygdala & Cortex Metabolism (pages 1-10)
Allen K. Bourdon (University of Tennessee, Knoxville, TN, USA), Clyde F. Phelix (University of Texas at San Antonio, San Antonio, TX, USA)
Article 3
Low Dose Pioglitazone Attenuates Oxidative Damage in Early Alzheimer's Disease by Binding mitoNEET: Transcriptome-To-Reactome™ Biosimulation of Neurons (pages 24-45)
Charles D. Hammack (University of Texas at San Antonio, San Antonio, TX, USA), George Perry (University of Texas at San Antonio, San Antonio, TX, USA), Richard G. LeBaron (University of Texas at San Antonio, San Antonio, TX, USA), Greg Villareal (AL Phahelix Biometrics, Inc., San Antonio, TX, USA), Clyde F. Phelix (University of Texas at San Antonio, San Antonio, TX, USA)
Article 4
Animal Actin Phylogeny and RNA Secondary Structure Study (pages 46-61)
Bibhuti Prasad Barik (P.G. Department of Zoology, Khallikote University, Brahmapur, India)
Issue 2
Article 1
Sequence Analysis of a Subset of Plasma Membrane Raft Proteome Containing CXXC Metal Binding Motifs: Metal Binding Proteins (pages 1-15)
Santosh Kumar Sahu (North Orissa University, Baripada, India), Himadri Gourav Behuria (North Orissa University, Baripada, India), Sangam Gupta (North Orissa University, Baripada, India), Babita Sahoo (Institute of Technical Education and Research, Siksha ‘O' Anusandhan University, Bhubaneswar, India)
Article 2
Automatic Test Data Generation using Metaheuristic Cuckoo Search Algorithm (pages 16-29)
Madhumita Panda (Seemanta Engineering College, Baripada, India), Partha Pratim Sarangi (Seemanta Engineering College, Baripada, India), Sujata Dash (North Orissa University, Baripada, India)
Article 3
Genome Sequence Analysis in Distributed Computing using Spark (pages 30-42)
Sagar Ap. (VIT University, Vellore, India), Pooja Mehta (VIT University, Vellore, India), Anuradha J. (VIT University, Vellore, India), B.K. Tripathy (School of Computing Science and Engineering, VIT University, Vellore, India)
Article 4
Performance Analysis of Microarray Data Classification using Machine Learning Techniques (pages 43-54)
Subhendu Kumar Pani (Biju Patnaik University of Technology, Bhubaneswar, India), Bikram Kesari Ratha (Utkal University, Bhubaneswar, India), Ajay Kumar Mishra (PN Autonomous College, Khordha, Bhubaneswar, India)
Volume 4 (2014)
Issue 1
Article 1
Towards a Mixed Approach to Extract Biomedical Terms from Text Corpus (pages 1-15)
Juan Antonio Lossio Ventura (LIRMM, University Montpellier 2, Montpellier, France & CNRS, Paris, France), Clement Jonquet (LIRMM, University Montpellier 2, Montpellier, France & CNRS, Paris, France), Mathieu Roche (UMR TETIS, Cirad, Irstea, AgroParisTech, Montpellier, France), Maguelonne Teisseire (UMR TETIS, Cirad, Irstea, AgroParisTech, Montpellier, France)
Article 2
Property and Personality Rights with Regard to Biobanks: A Layered System with Germany as an Example (pages 16-23)
Jürgen Robienski (Centre for Ethics and Law in the Life Sciences (CELLS), Medical University Hannover, Hannover, Germany), Jürgen Simon (Centre for Ethics and Law in the Life Sciences (CELLS), Medical University Hannover, Hannover, Germany)
Article 3
Domain-Based Approaches to Prediction and Analysis of Protein-Protein Interactions (pages 24-41)
Morihiro Hayashida (Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan), Tatsuya Akutsu (Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan)
Article 4
Biological and Medical Big Data Mining (pages 42-56)
George Tzanis (Aristotle University of Thessaloniki, Thessaloniki, Greece)
Issue 2
Article 1
Interactive Data Visualization to Understand Data Better: Case Studies in Healthcare System (pages 1-10)
Zhecheng Zhu (National Healthcare Group, Singapore), Bee Hoon Heng (National Healthcare Group, Singapore), Kiok Liang Teow (National Healthcare Group, Singapore)
Article 2
Analysis of microRNA Regulated Seed Biology Networks in Arabidopsis (pages 11-20)
Anamika Basu (Gurudas College, Kolkata, India), Anasua Sarkar (Government College of Engineering and Leather Technology, Kolkata, India), Piyali Basak (School of Bioscience and Engineering, Jadavpur University, Kolkata, India)
Article 3
Pharmacy Data Integrity for Optimal Analytics (pages 21-45)
C. David Butler (Teradata, Inc., Dayton, OH, USA)
Article 4
Gene Set- and Pathway- Centered Knowledge Discovery Assigns Transcriptional Activation Patterns in Brain, Blood, and Colon Cancer: A Bioinformatics Perspective (pages 46-69)
Lilit Nersisyan (Institute of Molecular Biology, National Academy of Sciences and College of Science and Engineering, American University of Armenia, Yerevan, Armenia), Henry Löffler-Wirth (Interdisciplinary Centre for Bioinformatics (IZBI), Leipzig University, Leipzig, Germany), Arsen Arakelyan (Institute of Molecular Biology, National Academy of Sciences and College of Science and Engineering, American University of Armenia, Yerevan, Armenia), Hans Binder (Interdisciplinary Centre for Bioinformatics (IZBI), Leipzig University, Leipzig, Germany)
Volume 3 (2012)
Issue 1
Article 1
Improved Feature Selection by Incorporating Gene Similarity into the LASSO (pages 1-22)
Christopher E. Gillies (Department of Computer Science and Engineering, Oakland University, Rochester, MI, USA), Xiaoli Gao (Department of Mathematics and Statistics, Oakland University, Rochester, MI, USA), Nilesh V. Patel (Department of Computer Science and Engineering, Oakland University, Rochester, MI, USA), Mohammad-Reza Siadat (Department of Computer Science and Engineering, Oakland University, Rochester, MI, USA), George D. Wilson (Radiation Oncology Department and BioBank Department Beaumont Health System, Royal Oak, MI, USA)
Article 2
Insight into Disrupted Spatial Patterns of Human Connectome in Alzheimer’s Disease via Subgraph Mining (pages 23-38)
Junming Shao (Department of Neuroradiology, Technische Universität München, Munich, Germany, & Institute for Computer Science, Johannes Gutenberg-Universität Mainz, Mainz, Germany), Qinli Yang (Institute for Computer Science, Ludwig-Maximilians-Universität München, Munich, Germany), Afra Wohlschläger (Department of Neuroradiology, Technische Universität München, Munich, Germany), Christian Sorg (Department of Neuroradiology and Psychiarty, Technische Universität München, Munich, Germany)
Article 3
Figure Based Biomedical Document Retrieval System using Structural Image Features (pages 39-58)
Harikrishna G. N. Rai (Infosys Labs, Infosys Limited, Bangalore, India), K Sai Deepak (Infosys Labs, Infosys Limited, Bangalore, India), P. Radha Krishna (Infosys Labs, Infosys Limited, Hyderabad, India)
Article 4
Exerting Cost-Sensitive and Feature Creation Algorithms for Coronary Artery Disease Diagnosis (pages 59-79)
Roohallah Alizadehsani (Department of Computer Engineering, Sharif University of Technology, Tehran, Iran), Mohammad Javad Hosseini (Department of Computer Engineering, Sharif University of Technology, Tehran, Iran), Reihane Boghrati (Department of Computer Engineering, Sharif University of Technology, Tehran, Iran), Asma Ghandeharioun (Department of Computer Engineering, Sharif University of Technology, Tehran, Iran), Fahime Khozeimeh (Mashhad University of Medical Science, Mashhad, Iran), Zahra Alizadeh Sani (Tehran University of Medical Science, Tehran, Iran)
Issue 2
Article 1
Classifier Ensemble Methods for Diagnosing COPD from Volatile Organic Compounds in Exhaled Air (pages 1-15)
Ludmila Ilieva Kuncheva (School of Computer Science, Bangor University, Bangor Gwynedd, UK), Juan Jose Rodríguez (Escuela Politécnica Superior, Universidad de Burgos, Burgos, Spain), Yasir Iftikhar Syed (Respiratory Department, Prince Philip Hospital, Dafen, Llanelli, UK), Christopher O. Phillips (Welsh Centre for Printing and Coating, College of Engineering, Swansea University, Swansea, UK), Keir Edward Lewis (Respiratory Department, Prince Philip Hospital, & College of Medicine, Swansea University, Llanelli, UK)
Article 2
Predicting Aging-Genes in Drosophila Melanogaster by Integrating Network Topological Features and Functional Categories (pages 16-26)
Yan-Hui Li (Institute of Cardiovascular Sciences and Key Laboratory of Molecular Cardiovascular Sciences, Ministry of Education, Peking University Health Science Center, Beijing, China), Jian-Hui Li (Computer Network Information Center Chinese Academy of Sciences, Beijing, China), Xin Song (Computer Network Information Center Chinese Academy of Sciences, Beijing, China), Kai Feng (Computer Network Information Center Chinese Academy of Sciences, Beijing, China), Yuan-Chun Zhou (Computer Network Information Center Chinese Academy of Sciences, Beijing, China)
Article 3
Evidence-Based Combination of Weighted Classifiers Approach for Epileptic Seizure Detection using EEG Signals (pages 27-44)
Abduljalil Mohamed (Computer Science and Engineering Department, College of Engineering, Qatar University, Qatar), Khaled Bashir Shaban (Computer Science and Engineering Department, College of Engineering, Qatar University, Qatar), Amr Mohamed (Computer Science and Engineering Department, College of Engineering, Qatar University, Qatar)
Article 4
Perspective Wall Technique for Visualizing and Interpreting Medical Data (pages 45-61)
Hela Ltifi (REsearch Group on Intelligent Machines, National School of Engineers, University of Sfax, Sfax, Tunisia), Mounir Ben Ayed (REsearch Group on Intelligent Machines, National School of Engineers, University of Sfax, Sfax, Tunisia), Ghada Trabelsi (REsearch Group on Intelligent Machines, National School of Engineers, University of Sfax, Sfax, Tunisia), Adel M. Alimi (REsearch Group on Intelligent Machines, National School of Engineers, University of Sfax, Sfax, Tunisia)
Issue 3
Article 1
Classification of Tandem Repeats in the Human Genome (pages 1-21)
Yupu Liang (Department of Computer Science, City University of New York, New York, NY, USA), Dina Sokol (Department of Computer and Information Science, Brooklyn College of CUNY, Brooklyn, NY, USA), Sarah Zelikovitz (Department of Computer Science, College of Staten Island of CUNY, Staten Island, NY, USA), Sarah Ita Levitan (Department of Computer Science, Brooklyn College of CUNY, Brooklyn, NY, USA)
Article 2
Coupled Matrix Factorization with Sparse Factors to Identify Potential Biomarkers in Metabolomics (pages 22-43)
Evrim Acar (Department of Food Science, Faculty of Science, University of Copenhagen, Copenhagen, Denmark), Gozde Gurdeniz (Department of Human Nutrition, Faculty of Science, University of Copenhagen, Copenhagen, Denmark), Morten A. Rasmussen (Department of Food Science, Faculty of Science, University of Copenhagen, Copenhagen, Denmark), Daniela Rago (Department of Human Nutrition, Faculty of Science, University of Copenhagen, Copenhagen, Denmark), Lars O. Dragsted (Department of Human Nutrition, Faculty of Science, University of Copenhagen, Copenhagen, Denmark), Rasmus Bro (Department of Food Science, Faculty of Science, University of Copenhagen, Copenhagen, Denmark)
Article 3
Healthcare Data Mining: Predicting Hospital Length of Stay (PHLOS) (pages 44-66)
Ali Azari (Information System department, University of Maryland, Baltimore County (UMBC), Baltimore, MD, USA), Vandana P. Janeja (Information System department, University of Maryland, Baltimore County (UMBC), Baltimore, MD, USA), Alex Mohseni (Emergency Medicine Associates, Potomac, MD, USA)
Article 4
Dis2PPI: A Workflow Designed to Integrate Proteomic and Genetic Disease Data (pages 67-85)
Daniel Luis Notari (Centro de Computação e Tecnologia da Informação, Universidade de Caxias do Sul, Caxias do Sul, Rio Grande do Sul, Brazil), Samuel Brando Oldra (Centro de Computação e Tecnologia da Informação, Universidade de Caxias do Sul, Caxias do Sul, Rio Grande do Sul, Brazil), Mauricio Adami Mariani (Centro de Computação e Tecnologia da Informação, Universidade de Caxias do Sul, Caxias do Sul, Rio Grande do Sul, Brazil), Cristian Reolon (Centro de Computação e Tecnologia da Informação, Universidade de Caxias do Sul, Caxias do Sul, Rio Grande do Sul, Brazil), Diego Bonatto (Centro de Biotecnologia da UFRGS, Departamento de Biologia Molecular e Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil)
Issue 4
Article 1
Data Mining for Biologists (pages 1-14)
Koji Tsuda (Max Planck Institute for Biological Cybernetics, Tübingen, Germany)
Article 2
Protein Interactions for Functional Genomics (pages 15-30)
Pablo Minguez (Centro de Investigación Príncipe Felipe (CIPF), Valencia, Spain), Joaquin Dopazo (Centro de Investigación Príncipe Felipe (CIPF), Valencia, Spain)
Article 3
Prioritizing Disease Genes and Understanding Disease Pathways (pages 31-49)
Xiaoyue Zhao (Bionovo Inc., Emeryville, CA, USA), Lilia M. Iakoucheva (Rockefeller University, New York, NY, USA), Michael Q. Zhang (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA)
Article 4
Predicting Protein Functions from Protein Interaction Networks (pages 50-70)
Hon Nian Chua (Institute for Infocomm Research, Singapore), Limsoon Wong (National University of Singapore, Singapore)
Volume 2 (2011)
Issue 1
Article 1
Combinatorial Optimization Algorithms for Metabolic Networks Alignments and Their Applications (pages 1-23)
Qiong Cheng (University of Miami, FL, USA), Alexander Zelikovsky (Georgia State University, GA)
Article 2
Influence of Genomic and Other Biological Data Sets in the Understanding of Protein Structures, Functions and Interactions (pages 24-44)
N. Srinivasan (Indian Institute of Science, India), G. Agarwal (Indian Institute of Science, India), R. M. Bhaskara (Indian Institute of Science, India), R. Gadkari (Indian Institute of Science, India), O. Krishnadev (University of Georgia, USA), B. Lakshmi (National Centre for Biological Sciences, India), S. Mahajan (National Centre for Biological Sciences, India), S. Mohanty (Indian Institute of Science, India), R. Mudgal (Indian Institute of Science, India), R. Rakshambikai (Indian Institute of Science, India), S. Sandhya (Indian Institute of Science, India), G. Sudha (Indian Institute of Science, India), L. Swapna (Indian Institute of Science, India), N. Tyagi (Indian Institute of Science, India)
Article 3
Scaling Unsupervised Risk Stratification to Massive Clinical Datasets (pages 45-59)
Zeeshan Syed (University of Michigan, USA), Ilan Rubinfeld (Henry Ford Hospital, USA)
Article 4
Medical Domain Knowledge and Associative Classification Rules in Diagnosis (pages 60-73)
Sung Ho Ha (Kyungpook National University, Korea)
Issue 2
Article 1
Transcriptome-To-Metabolome™ Biosimulation Reveals Human Hippocampal Hypometabolism with Age and Alzheimer’s Disease (pages 1-18)
Clyde F. Phelix (University of Texas at San Antonio and AL Phahelix Biometrics, Inc., USA), Richard G. LeBaron (University of Texas at San Antonio and AL Phahelix Biometrics, Inc., USA), Dawnlee J. Roberson (AL Phahelix Biometrics, Inc., USA), Rosa E. Villanueva (SouthWest Clinical Laboratory Consultants, USA), Greg Villareal (CFPAL Biomedical Consultants, USA), Omid B. Rahimi (University of Texas Health Science Center, USA), Sandra Siedlak (Case Western Reserve University, USA), Xiongwei Zhu (Case Western Reserve University, USA), George Perry (University of Texas at San Antonio, USA)
Article 2
Graph-Based Shape Analysis for MRI Classification (pages 19-33)
Seth Long (Washington State University, USA), Lawrence B. Holder (Washington State University, USA)
Article 3
Association Rule Mining Based HotSpot Analysis on SEER Lung Cancer Data (pages 34-54)
Ankit Agrawal (Northwestern University, USA), Alok Choudhary (Northwestern University, USA)
Article 4
Search for Protein Sequence Homologues that Display Considerable Domain Length Variations (pages 55-77)
Eshita Mutt (National Centre for Biological Sciences (TIFR) and International Institute of Information Technology Hyderabad, India), Abhijit Mitra (International Institute of Information Technology Hyderabad, India), R. Sowdhamini (National Centre for Biological Sciences (TIFR), India)
Issue 3
Article 1
Early Deterioration Warning for Hospitalized Patients by Mining Clinical Data (pages 1-20)
Yi Mao (Washington University in St. Louis, USA, and Xidian University, China), Yixin Chen (Washington University in St. Louis, USA), Gregory Hackmann (Washington University in St. Louis, USA), Minmin Chen (Washington University in St. Louis, USA), Chenyang Lu (Washington University in St. Louis, USA), Marin Kollef (Washington University School of Medicine, USA), Thomas C. Bailey (Washington University School of Medicine, USA)
Article 2
BioTextRetriever: A Tool to Retrieve Relevant Papers (pages 21-36)
Célia Talma Gonçalves (Instituto Superior de Contabilidade e Administração do Porto & CEISE-STI, Portugal), Rui Camacho (Universidade do Porto, Portugal), Eugénio Oliveira (Universidade do Porto, Portugal)
Article 3
Trend Analysis of Length of Stay Data via Phase-Type Models (pages 37-51)
Truc Viet Le (Nanyang Technological University, Singapore), Chee Keong Kwoh (Nanyang Technological University, Singapore), Kheng Hock Lee (Singapore General Hospital, Singapore), Eng Soon Teo (Nanyang Technological University, Singapore)
Article 4
Medical Survival Analysis Through Transduction of Semi-Supervised Regression Targets (pages 52-65)
Faisal M. Khan (Rutgers University, USA), Qiuhua Liu (Schlumberger Limited, USA)
Issue 4
Article 1
Mining Medical Data to Develop Clinical Decision Making Tools in Hemodialysis: Prediction of Cardiovascular Events and Feature Selection using a Random Forest Approach (pages 1-17)
Jasmine Ion Titapiccolo (Politecnico di Milano, Italy), Manuela Ferrario (Politecnico di Milano, Italy), Sergio Cerutti (Politecnico di Milano, Italy), Carlo Barbieri (Fresenius Medical Care, Germany), Flavio Mari (Fresenius Medical Care, Germany), Emanuele Gatti (Fresenius Medical Care, Germany), Maria G. Signorini (Politecnico di Milano, Italy)
Article 2
Knowledge Discovery and Multimodal Inputs for Driving an Intelligent Wheelchair (pages 18-34)
Brígida Mónica Faria (University of Aveiro, Institute of Electronics and Telematics Engineering of Aveiro, Polytechnic Institute of Porto & Artificial Intelligence and Computer Science Laboratory of University, Porto, Portugal), Luís Paulo Reis (University of Minho & Artificial Intelligence and Computer Science Laboratory of University, Porto, Portugal), Nuno Lau (University of Aveiro & Institute of Electronics and Telematics Engineering of Aveiro, Portugal)
Article 3
Identification Methods of G Protein-Coupled Receptors (pages 35-52)
Meriem Zekri (Badji Mokhtar-Annaba University, Algeria), Karima Alem (Badji Mokhtar-Annaba University, Algeria), Labiba Souici-Meslati (Badji Mokhtar-Annaba University, Algeria)
Article 4
PASS2: A Database of Structure-Based Sequence Alignments of Protein Structural Domain Superfamilies (pages 53-66)
Karuppiah Kanagarajadurai (Madurai Kamaraj University, India), Singaravelu Kalaimathy (Biotechnologisches Zentrum, Germany), Paramasivam Nagarajan (Max Planck Institute for Developmental Biology, Germany), Ramanathan Sowdhamini (National Centre for Biological Sciences, India)
Volume 1 (2010)
Issue 1
Article 1
Prediction of Protein-Protein Interactions Between Human Host and Two Mycobacterial Organisms (pages 1-13)
Oruganty Krishnadev (Indian Institute of Science, India), Shveta Bisht (Indian Institute of Science, India), Narayanaswamy Srinivasan (Indian Institute of Science, India)
Article 2
Finding Minimum Reaction Cuts of Metabolic Networks Under a Boolean Model Using Integer Programming and Feedback Vertex Sets (pages 14-31)
Takeyuki Tamura (Kyoto University, Japan), Kazuhiro Takemoto (Graduate School of Frontier Sciences, Japan), Tatsuya Akutsu (Kyoto University, Japan)
Article 3
Characterization and Classification of Local Protein Surfaces Using Self-Organizing Map (pages 32-47)
Lee Sael (Purdue University, USA), Daisuke Kihara (University, USA)
Article 4
Mapping Affymetrix Microarray Probes to the Rat Genome via a Persistent Index (pages 48-65)
Susan Fairley (University of Glasgow, UK), John D. McClure (University of Glasgow, UK), Neil Hanlon (University of Glasgow, UK), Rob Irving (University of Glasgow, UK), Martin W. McBride (University of Glasgow, UK), Anna F. Dominiczak (University of Glasgow, UK), Ela Hunt (University of Strathclyde, UK)
Article 5
A Transfer Learning Approach and Selective Integration of Multiple Types of Assays for Biological Network Inference (pages 66-80)
Tsuyoshi Kato (AIST Computational Biology Research Center, Japan, and Ochanomizu University, Japan), Kinya Okada (KO Institute for Medical Bioinformatics, Japan), Hisashi Kashima (IBM Research, Japan), Masashi Sugiyama (Tokyo Institute of Technology, Japan)
Article 6
New Trends in Graph Mining: Structural and Node-Colored Network Motifs (pages 81-99)
Francesco Bruno (DEIS, Università della Calabria, Italy), Luigi Palopoli (DEIS, Università della Calabria, Italy), Simona E. Rombo (DEIS, Università della Calabria, Italy)
Issue 2
Article 1
SPCCTDM, a Catalogue for Analysis of Therapeutic Drug Monitoring Related Contents in the Drug Prescription Information (pages 1-11)
Sven Ulrich (Pharmaceutical Consultant, Germany), Pierre Baumann (University of Lausanne, Switzerland), Andreas Conca (Regional Hospital of Bolzano, Italy), Hans-Joachim Kuss (University of Munich, Germany), Viktoria Stieffenhofer (University of Mainz, Germany), Christoph Hiemke (University of Mainz, Germany)
Article 2
Clustering Genes Using Heterogeneous Data Sources (pages 12-28)
Erliang Zeng (University of Notre Dame, USA), Chengyong Yang (Life Technologies Inc., USA), Tao Li (Florida International University, USA), Giri Narasimhan (Florida International University, USA)
Article 3
Infer Species Phylogenies Using Self-Organizing Maps (pages 29-49)
Xiaoxu Han (Eastern Michigan University, USA)
Article 4
Wave-SOM: A Novel Wavelet-Based Clustering Algorithm for Analysis of Gene Expression Patterns (pages 50-73)
Andrew Blanchard (University of Arkansas, USA), Christopher Wolter (University of Arkansas & University of Minnesota, USA), David S. McNabb (University of Arkansas, USA), Eitan Gross (University of Arkansas, USA)
Issue 3
Article 1
Incorporating Network Topology Improves Prediction of Protein Interaction Networks from Transcriptomic Data (pages 1-19)
Peter E. Larsen (Argonne National Laboratory, USA), Frank Collart (Argonne National Laboratory, USA), Yang Dai (University of Illinois at Chicago, USA)
Article 2
Mining Protein Interactome Networks to Measure Interaction Reliability and Select Hub Proteins (pages 20-35)
Young-Rae Cho (Baylor University, USA), Aidong Zhang (State University of New York, Buffalo, USA)
Article 3
Discriminative Subgraph Mining for Protein Classification (pages 36-52)
Ning Jin (University of North Carolina, Chapel Hill, USA), Calvin Young (University of North Carolina, Chapel Hill, USA), Wei Wang (University of North Carolina, Chapel Hill, USA)
Article 4
Identification of Distinguishing Motifs (pages 53-67)
Wangsen Feng (Peking University, China), Lusheng Wang (City University of Hong Kong, China)
Article 5
Mining Frequent Boolean Expressions: Application to Gene Expression and Regulatory Modeling (pages 68-96)
Mohammed J. Zaki (Rensselaer Polytechnic Institute, USA), Naren Ramakrishnan (Virginia Tech., USA), Lizhuang Zhao (Microsoft Corp., USA)
Article 6
Bioinformatics Methods for Studying MicroRNA and ARE-Mediated Regulation of Post-Transcriptional Gene Expression (pages 97-112)
Richipal Singh Bindra (New Jersey Institute of Technology, USA), Jason T. L. Wang (New Jersey Institute of Technology, USA), Paramjeet Singh Bagga (Ramapo College of New Jersey, USA)
Issue 4
Article 1
Hierarchical Density-Based Clustering of White Matter Tracts in the Human Brain (pages 1-25)
Junming Shao (University of Munich, Germany), Klaus Hahn (HMGU Helmholtz Center Munich, Germany), Qinli Yang (University of Edinburgh, UK), Afra Wohlschläeger (Technical University of Munich, Germany), Christian Boehm (University of Munich, Germany), Nicholas Myers (Technical University of Munich, Germany), Claudia Plant (Florida State University, USA)
Article 2
Revealing the Origin and Nature of Drug Resistance of Dynamic Tumour Systems (pages 26-53)
Ricardo Santiago-Mozos (National University of Ireland Galway, Ireland), Imtiaz A. Khan (Cardiff University, UK), Michael G. Madden (National University of Ireland Galway, Ireland)
Article 4
Efficient Mining Frequent Closed Discriminative Biclusters by Sample-Growth: The FDCluster Approach (pages 69-88)
Miao Wang (Northwestern Polytechnical University, China), Xuequn Shang (Northwestern Polytechnical University, China), Shaohua Zhang (Northwestern Polytechnical University, China), Zhanhuai Li (Northwestern Polytechnical University, China)