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PAGeneRN: Parallel Architecture for Gene Regulatory Network

PAGeneRN: Parallel Architecture for Gene Regulatory Network

Dina Elsayad, A. Ali, Howida A. Shedeed, Mohamed F. Tolba
Copyright: © 2020 |Pages: 24
ISBN13: 9781799812043|ISBN10: 1799812049|EISBN13: 9781799812050
DOI: 10.4018/978-1-7998-1204-3.ch055
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MLA

Elsayad, Dina, et al. "PAGeneRN: Parallel Architecture for Gene Regulatory Network." Data Analytics in Medicine: Concepts, Methodologies, Tools, and Applications, edited by Information Resources Management Association, IGI Global, 2020, pp. 1052-1075. https://doi.org/10.4018/978-1-7998-1204-3.ch055

APA

Elsayad, D., Ali, A., Shedeed, H. A., & Tolba, M. F. (2020). PAGeneRN: Parallel Architecture for Gene Regulatory Network. In I. Management Association (Ed.), Data Analytics in Medicine: Concepts, Methodologies, Tools, and Applications (pp. 1052-1075). IGI Global. https://doi.org/10.4018/978-1-7998-1204-3.ch055

Chicago

Elsayad, Dina, et al. "PAGeneRN: Parallel Architecture for Gene Regulatory Network." In Data Analytics in Medicine: Concepts, Methodologies, Tools, and Applications, edited by Information Resources Management Association, 1052-1075. Hershey, PA: IGI Global, 2020. https://doi.org/10.4018/978-1-7998-1204-3.ch055

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Abstract

The gene expression analysis is an important research area of Bioinformatics. The gene expression data analysis aims to understand the genes interacting phenomena, gene functionality and the genes mutations effect. The Gene regulatory network analysis is one of the gene expression data analysis tasks. Gene regulatory network aims to study the genes interactions topological organization. The regulatory network is critical for understanding the pathological phenotypes and the normal cell physiology. There are many researches that focus on gene regulatory network analysis but unfortunately some algorithms are affected by data size. Where, the algorithm runtime is proportional to the data size, therefore, some parallel algorithms are presented to enhance the algorithms runtime and efficiency. This work presents a background, mathematical models and comparisons about gene regulatory networks analysis different techniques. In addition, this work proposes Parallel Architecture for Gene Regulatory Network (PAGeneRN).

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